Publications on Scientific Journals and Conferences


Publications and submitted papers on 2010

  1. Maojo V, De la Iglesia D, Martín-Sanchez F, Hermosilla I, Potamias G, Moustakis V, Gonzalez de Quirós F, Otero P, González Nilo D, Pérez-Acle T, Legré Y, Keuchkerian S, Kern J, Fister K, Kulikowski C, Mitchell JA (2010). The ACTION-Grid White Paper. Nanoinformatics: Expanding the VPH vision towards Nanomedicine. (Abstract submitted to the VPH2010 conference . Under evaluation).
  2. Alonso-Calvo R, Crespo J, Maojo V, Muñoz A, García-Remesal M, Pérez-Rey D (2010). Cloud Computing Services for Managing Large Image Data- Sets Using Balanced Collaborative Agents. (Paper submitted to the American Medical Informatics Association Annual Symposium AMIA 2010. Under evaluation).
  3. Anguita A, Martín L, Pérez-Rey D, Maojo V. A review of methods and tools for database integration in biomedicine. (Paper submitted to the Journal of Current Bioinformatics. Invited paper. Under evaluation, second revision phase).
  4. Polasek O, Kern J. Medical informatics in enlarged Europe - the analysis of medical informatics scientific output in 33 European countries. (Paper submitted. Under evaluation).
  5. Fister K, Polasek O, Vuletic S, Kern J: Paving the way for personalized behaviorally based prevention of obesity: systematic review. (Paper submitted. Under evaluation).
  6. Barriuso S, De La Barrera J, Salamanca L, De Andrés E, Villarrubia-Enseñat A, Pazos A, Maojo V, Martin-Sanchez F (2010). NanoInformática médica: definición, objetivos y proyectos. Informática y Salud. I+S. 79 / 13-24 / MIC / Feb. 2010.
  7. Barriuso S, Lopez-Alonso V, Barrera J, Maojo V, Martin-Sanchez F. Approaching the Nanomedicine field from Biomedical Informatics (2010). Accepted paper and poster for the 13th World Congress on Medical and Health Informatics Medinfo 2010 to be held from 12-15th September 2010, Cape Town (South Africa).
  8. Solomonides T, Müller H, Mirza M, Kratz M. Tutorial: Grid Computing for Biomedicine. Accepted workshop for the 13th World Congress on Medical and Health Informatics Medinfo 2010 to be held from 12-15th September 2010, Cape Town (South Africa).
  9. Gomez A, Benitez S, Otero P, Smith M, Baum A, Luna D, González Bernaldo de Quirós F. Evolution of Nanomedicine, Bioinformatics and Grid computing in medical bibliographic databases. Accepted paper and poster for the 13th World Congress on Medical and Health Informatics Medinfo 2010 to be held from 12-15th September 2010, Cape Town (South Africa).
  10. De la Iglesia D, Maojo V, Chiesa S, Martin-Sanchez F, Kern J, Potamias G, Crespo J, Garcia-Remesal M, Keuchkerian S, Kulikowski C, Mitchell J. International efforts in Nanoinformatics research applied to Nanomedicine. Extension of the scientific paper "European efforts in nanoinformatics research applied to nanomedicine", presented at MIE 2009. (Paper submitted to the journal Methods of Information in Medicine. Invited paper. Under evaluation).
  11. García-Remesal M, Cuevas A, López-Alonso V, López-Campos G, de la Calle G, De La Iglesia D, Pérez-Rey D, Crespo J, Martín-Sánchez F, Maojo V. A "Method for Automatically Extracting Infectious Diseases-Related Primers and Probes from the Literature". (Paper submitted to the journal BMC Bioinformatics. Under evaluation, second revision phase).
  12. Mantas J, Ammenwerth E, Demiris G, Hasman A, Haux R, Hersh W, Hovenga E, Lun KC, Marin H, Martin-Sanchez F, Wright G (2010). IMIA Recommendations on Education Task Force. Recommendations of the International Medical Informatics Association (IMIA) on Education in Biomedical and Health Informatics. First Revision. Methods Inf Med. 2010 Jan 7;49(2):105-120.
  13. Maojo V, Martin-Sanchez F, Kulikowski C, Rodriguez-Paton A, Fritts M (2010). Nanoinformatics and DNA-Based Computing: Catalyzing Nanomedicine. Pediatr Res. 2010 May 67(5): 481-9.
  14. Martin-Sanchez F, Hermosilla-Gimeno I (2010). Translational Bioinformatics. Ch. 24 in the Book Health Informatics: An overview. / 312-337 / Technology and Informatics 151 / 2010 / Eds: EJS Hovenga et al, IOS Press. ISBN 978-1-60750-092-6.
  15. Martin-Sanchez F, Hermosilla-Gimeno I (2010). Translational Bioinformatics. Stud Health Technol Inform. 2010;151:312-37.
  16. Maojo V, Kulikowski C, de la Iglesia D, Crespo J, Garcia-Remesal M, Perez-Rey D, de la Calle G, Martin L, Anguita A, Jimenez A, Mitchell J, Facelli J. Comparing Biomedical Informatics and Nanoinformatics in the context of Nanomedicine. (Paper submitted to the American Medical Informatics Association Annual Symposium AMIA 2010, under evaluation).
  17. Sfakianakis S, Blazantonakis M, Dimou I, Zervakis M, Tsiknakis M, Potamias G, Kafetzopoulos D, Lowe D (2010). Decision support based on genomics: integration of data- and knowledge-driven reasoning. International Journal of Biomedical Engineering and Technology, 2010; 3(3-4): 287-307.

Publications on 2009

  1. Chiesa S, De la Iglesia D, Crespo J, Martin-Sanchez, F, Kern J, Potamias G, Maojo V (2009). European Efforts in Nanoinformatics Research Applied to Nanomedicine". Studies in Health Technology and Informatics. Vol. 150 Medical Informatics in a United and Healthy Europe. 2009; 757-761. Paper presented at MIE2009 in Sarajevo (Bosnia-Herzegovina) in September 2009.
  2. De la Calle G, Garcia Remesal M, Chiesa S, de la Iglesia D, Maojo V (2009). BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature. BMC Bioinformatics. 2009 October; 10(1):320.
  3. De la Iglesia D, Chiesa S, Kern J, Maojo V, Martin-Sanchez F, Potamias G, Moustakis V, Mitchell JA (2009). Nanoinformatics: new challenges for biomedical informatics at the nano level. 22nd Congress of the European Federation for Medical Informatics (MIE'09), Aug. 30 - Sept. 2 2009, Studies in Health Technology and Informatics 150: 987-991.
  4. Fister K, Polasek O, Vuletić S, Kern J (2009). Single nucleotide polymorphisms and health behaviours related to obesity - trawling the evidence in the prospect of personalised prevention. Stud Health Technol Inform. 2009;150:762-6.
  5. Kanterakis A, Moustakis V, Kafetzopoulos D, Potamias G. (2009). Revealing Disease Mechanisms via Coupling Molecular Pathways Scaffolds and Microarrays: A Study on the Wilm's Tumor Disease. BMIINT: Biomedical Informatics & Intelligent Methods in the Support of Genomic Medicine, AIAI 2009 workshop, April 24 2009, Thessaloniki, Greece, CEUR Proceedings 475: 88-99.
  6. Kern J, Fišter K, Polašek O, Petrovečki M, Stevanović R, Vuletić S (2009). ACTION Grid - International Cooperation on Grid Computing and Biomedical Informatics between European Union, Latin America, the Western Balkans, and North Africa. Medicinska informatika 2009;9:136-8. (Medicinska informatika 2009, Proceedings of the 9th Symposium of the Croatian Society for Medical Informatics. Osijek [Croatia], 2009)
  7. Koumakis L, Moustakis V, Tsiknakis M, Kanterakis A, Kafetzopoulos D, Potamias G (2009). Supporting Genotype-To-Phenotype Association Studies with Grid-Enabled Knowledge Discovery Workflows. Proceedings of the 31st Annual International IEEE EMBS Conference (EMBC'09), pp. 6958-6962, September 2-6, 2009, Minneapolis, Minnesota, USA.
  8. Koumakis L, Sfakianakis S, Moustakis V, Potamias G. (2009). Discovery of Genotype-to-Phenotype Associations: A Grid-enabled Scientific Workflow Setting. BMIINT: Biomedical Informatics & Intelligent Methods in the Support of Genomic Medicine, AIAI 2009 workshop, April 24 2009, Thessaloniki, Greece, CEUR Proceedings 475: 48-59.
  9. Martin-Sanchez F, Maojo V (2009). Biomedical Informatics and the Convergence of Nano-Bio-Info-Cogno (NBIC) Technologies. Yearb Med Inform. 2009:134-42.
  10. Polašek O, Fišter K, Vuletić S, Kern J (2009). P2P in public health: from particles to populations. U: Luzar-Stiffler V, Jarec I, Bekić Z, editors. Proceedings of the 31st International Conference on Information Technology Interfaces (ITI 2009 ). Cavtat/Dubrovnik 2009.Zagreb: SRCE; 2009. pp. 93-7.
  11. Sfakianakis S, Koumakis L, Zacharioudakis G, Tsiknakis M. Web-Based Authoring and Secure Enactment of Bioinformatics Workflows. Workshops at the Grid and Pervasive Computing Conference, 2009; Proceeding: 88-95.
  12. Tsiknakis M, Sfakianakis S, Zacharioudakis G, Koumakis L, Kanterakis A, Potamias G, Kafetzopoulos D. (2009). A Semantically Aware Platform for the Authoring and Secure Enactment of Bioinformatics Workflows. Proceedings 31st Annual International IEEE EMBS Conference (EMBC'09), pp. 5625-5628, September 2-6 2009, Minneapolis, Minnesota, USA.

Publications on 2008

  1. Altman RB, Balling R, Brinkley JF, Coiera E, Consorti F, Dhansay MA, Geissbuhler A, Hersh W, Kwankam SY, Lorenzi NM, Martin-Sanchez F, Mihalas GI, Shahar Y, Takabayashi K, Wiederhold G (2008). Commentaries on "Informatics and medicine: from molecules to populations. Methods Inf Med. 2008;47(4):296-317.
  2. Chiesa S, García-Remesal M, De la Calle G, De la Iglesia D, Bankauskaite V, Maojo V (2008). Building an Index of Nanomedical Resources: An Automatic Approach Based on Text Mining. Proceedings of the KES 2008 (2) 2008: 50-57
  3. Christodoulou E, Ioannou M, Kafousi M, Sanidas E, Papagiannakis G, Danilatou V, Tsiliki G, Margaritis T, Kondylakis H, Manakanatas D, Koumakis L, Kanterakis A, Vassilaros S, Tsiknakis M, Analyti A, Potamias G, et al. (2008). A new gene expression signature related to breast cancer estrogen receptor status. Proceedings IEEE 8th International Conference on BioInformatics and BioEngineering (BIBE 2008), pp. 1-7, Oct. 8-10 2008 Athens, Greece.
  4. Kalaitzakis M, Kritsotakis V, Grangeat P, Paulus C, Gerfault L, Perez M, Reina C, Potamias G, Tsiknakis M, Kafetzopoulos D, Binz Pierre-Alain (2008). Proteomic based identification of cancer biomarkers: The LOCCANDIA integrated platform. Proceedings IEEE 8th International Conference on BioInformatics and BioEngineering (BIBE 2008), pp. 1-7, Oct. 8-10 2008 Athens, Greece.
  5. Kalaitzakis M, Kritsotakis V, Kondylakis H, Potamias G, Tsiknakis M, Kafetzopoulos D. (2008). An Integrated Clinico-Proteomics Information Management and Analysis Platform. Proceedings 21st IEEE International Symposium on Computer-Based Medical System (CBMS 2008), pp. 218-220, June 17-19 2008, Jyvaskyla, Finland.
  6. Kanterakis A, Kafetzopoulos D, Moustakis V, Potamias G (2008). Mining Gene Expression Profiles and Gene Regulatory Networks: Identification of Phenotype Specific Molecular Mechanisms. In J. Darzentas, G.A Vouros, S. Vosinakis and A. Arnellos (Eds). Artificial Intelligence: Theories, Models and Applications, LNCS, Vol. 5138/2008, pp. 97 - 109.
  7. Kanterakis A, Kafetzopoulos D, Moustakis V, Potamias G (2008). Mining Gene Regulatory Networks and Microarray Data: The MinePath Approach. 18th European Conference on Artificial Intelligence (ECAI'08), Workshop on Bioinformatics, Genomics & Proteomics, an Artificial Intelligence Approach (BIGPAIA), July 22, 2008, Patras, Greece.
  8. Kern J, Fister K, Petrovecki M, Polasek O, Stevanovic R, Vuletic S, Maojo V, Martin-Sanchez F, Potamias G, Quiros F, Gonzalez D, Legre Y, Moustakis V (2008). "Action-Grid: International Networking in Grid Computing and Biomedical Informatics". AIM 2008; 16(3): 156-158.
  9. Kern J (2008). ACTION-Grid - Regionalno i međunarodno povezivanje u području nano, bio i medicinske informatike (nano-bio-med). [Action Grid - regional and international linking in nano, bio and medical informatics]. Infotrend 2008. Available from: http://infotrend.hr/clanak/2008/10/action-grid,23,532.html
  10. López-Alonso V, Hermosilla-Gimeno I, Lopez-Campos G, Maojo V, Martin-Sanchez F (2008). Action GRID: assessing the impact of Nanotechnology on Biomedical Informatics. Annual Symposium proceedings. AMIA Symposium 2008:1046.
  11. Maojo V, García-Remesal M, Crespo J (2008). Detectors could spot plagiarism in research proposals. Nature. 2008 No 6;456(7218):30.
  12. Martin-Sanchez F, López-Alonso V, Hermosilla-Gimeno I, Lopez-Campos G (2008). A Primer in Knowledge Management for Nanoinformatics in Medicine in book Knowledge-Based Intelligent Information and Engineering Systems. Lovrek, Howlett and Jain (Eds). KES 2008 LNAI Volume 5178/2008 Serie Lecture Notes in Computer Science, Springer Berlin /Heidelberg. Pág. 66-72
  13. Moustakis V, Potamias G, Laine M, Loos B, Koumakis L (2008). Linking genetic susceptibility with clinical findings: a case study in periodontitis. European Journal of Human Genetics 16(Suppl. 2): 341.
  14. Polasek O (2008). ACTION-Grid: povezivanje nano i biomedicinske informatike. [Action Grid: Linking the nano- and bioinformatics] Lijecnicke novine 2008;74:22.
  15. Tsiknakis M, Brochhausen M, Nabrzyski J, Pucacki J, Sfakianakis S, Potamias G, Desmedt C, Kafetzopoulos D (2008). A Semantic Grid Infrastructure Enabling Integrated Access and Analysis of Multilevel Biomedical Data in Support of Post-Genomic Clinical Trials on Cancer. IEEE Transactions on Information Technology in Biomedicine 12(2): 205-217.
  16. Tsiliki G, Kaforou S, Kapsetaki M, Potamias G, Kafetzopoulos D (2008). A computational approach to microarray universal reference sample. Proceeding IEEE 8th International Conference on BioInformatics and BioEngineering (BIBE 2008), pp. 1-7, Oct. 8-10 2008 Athens, Greece.